genewise output
Score 216.30 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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GPX3b_Zebrafish    1 MAANSVYDFTVETLEEKSVSLDIFRGKVLLIMNVATFXGST--Q      
                     M   S+YDF+ ETL+ + V L  +RGKVLLI+NVATFXGST         
                     MENKSIYDFSAETLDGQLVPLSNYRGKVLLIVNVATFXGSTIEE      
OMLM01006563.1-51374 agaatatgttggacggccgccaatagagccagaggattgtaagg      
                     taaactaatccactagattctgaaggatttttatcctggcctaa      
                     ggtaacttcttgggtagatgttccgtggtcccttcccagaaagg      


GPX3b_Zebrafish   43                        YHRMNALMDMYGGQRFTVLGFPCNQF 
                                            YHR+NALM+M+G   FTVLGFPCNQF 
                                            YHRLNALMEMFGDLSFTVLGFPCNQF 
OMLM01006563.1-51242 GTAATAA  Intron 1   CAGtcccagcagatggcatagcgtctact 
                     <0-----[51242:51132]-0>aagtacttattgatgtcttgtcgaat 
                                            tcagtaggagttccccttgcccccgt 


GPX3b_Zebrafish   69 GLQSP                          ENHETLNVLQHVRPGSGF 
                     GLQSP                           +HETL++L++VRPG GF 
                     GLQSP          G:E[gaa]        VSHETLDILKYVRPGGGF 
OMLM01006563.1-51053 gcctcGGTAGGTA  Intron 2   CAGAAgacgacgacatgacgggt 
                     gtacc <1-----[51037:50360]-1>  tgaactattaatgcgggt 
                     ttgtt                          gtcactttggtgatttgt 


GPX3b_Zebrafish   93 LPKFPIFSRIEVNGSDEDPLYAYLK                       E 
                     +PKFP+FS++EVNG +E+PL+ YLK                       E 
                     VPKFPVFSKVEVNGLNEEPLFTYLK                       E 
OMLM01006563.1-50303 gcatcgtaagggagtaggcctatcaGTAGCGT  Intron 3   CAGg 
                     tcatcttgatatagtaaacttcata<0-----[50228:50132]-0>a 
                     gagtactcgtggtaatagttcctag                       a 


GPX3b_Zebrafish  119 SLPFVNPVIGDIRKLYWSPIKANDVRWNFEKFLITADGRPYKR       
                     SLPFVNP+IGDI+K YWSPIK ND+RWNFEKFLI A+G P+KR       
                     SLPFVNPLIGDIKKFYWSPIKVNDIRWNFEKFLINAEGTPFKR       
OMLM01006563.1-50128 ttctgaccaggaaattttcaagagactatgatcaagggactaa       
                     ctcttacttgataatagcctataatggataatttacagcctag       
                     tgatcctttataaaccgcatactctggttggttttaacactag       


//
Making a E in phase 1 intron
>OMLM01006563.1:subseq(27562,87881).pep
MENKSIYDFSAETLDGQLVPLSNYRGKVLLIVNVATFXGSTIEEYHRLNALMEMFGDLSF
TVLGFPCNQFGLQSPEVSHETLDILKYVRPGGGFVPKFPVFSKVEVNGLNEEPLFTYLKE
SLPFVNPLIGDIKKFYWSPIKVNDIRWNFEKFLINAEGTPFKR
//
>OMLM01006563.1:subseq(27562,87881).[51374:49998].sp
ATGGAGAATAAATCAATCTATGATTTCTCTGCTGAGACGCTGGATGGACAGCTAGTTCCG
CTTAGTAACTACAGGGGTAAGGTGCTTCTCATCGTCAATGTTGCCACCTTCTGAGGGTCA
ACAATAGAGGAGTATCACCGACTGAATGCACTGATGGAAATGTTTGGTGACCTCAGCTTC
ACTGTTCTGGGCTTCCCCTGCAACCAGTTTGGTCTTCAGTCTCCTGAAGTGAGTCACGAA
ACCCTTGATATTCTGAAGTATGTGAGACCTGGTGGTGGGTTTGTGCCAAAGTTTCCAGTC
TTTAGCAAGGTTGAGGTGAATGGATTAAATGAAGAGCCTCTTTTCACCTATCTAAAGGAA
TCTTTGCCATTTGTCAACCCTCTTATTGGAGATATAAAAAAATTCTACTGGTCCCCAATT
AAAGTCAATGACATTCGGTGGAATTTTGAGAAGTTTCTTATTAATGCAGAAGGCACACCC
TTTAAAAGG
//
OMLM01006563.1:subseq(27562,87881)	GeneWise	match	51374	50000	217.30	-	.	OMLM01006563.1:subseq(27562,87881)-genewise-prediction-1
OMLM01006563.1:subseq(27562,87881)	GeneWise	cds	51374	51243	0.00	-	0	OMLM01006563.1:subseq(27562,87881)-genewise-prediction-1
OMLM01006563.1:subseq(27562,87881)	GeneWise	intron	51242	51132	0.00	-	.	OMLM01006563.1:subseq(27562,87881)-genewise-prediction-1
OMLM01006563.1:subseq(27562,87881)	GeneWise	cds	51131	51038	0.00	-	0	OMLM01006563.1:subseq(27562,87881)-genewise-prediction-1
OMLM01006563.1:subseq(27562,87881)	GeneWise	intron	51037	50360	0.00	-	.	OMLM01006563.1:subseq(27562,87881)-genewise-prediction-1
OMLM01006563.1:subseq(27562,87881)	GeneWise	cds	50359	50229	0.00	-	2	OMLM01006563.1:subseq(27562,87881)-genewise-prediction-1
OMLM01006563.1:subseq(27562,87881)	GeneWise	intron	50228	50132	0.00	-	.	OMLM01006563.1:subseq(27562,87881)-genewise-prediction-1
OMLM01006563.1:subseq(27562,87881)	GeneWise	cds	50131	50000	0.00	-	0	OMLM01006563.1:subseq(27562,87881)-genewise-prediction-1
//